In diagnostic pathology, the most conventional approach is to use a light microscope to study, investigate, and assess cells and tissues at a microscopic level. However, light microscopy has inherent limitations in terms of its resolution, restricting what can be observed through the lens. To overcome these limitations, electron microscopy was first utilised in the mid 20 th century to further complement light microscopy in diagnosing various pathologies. Unlike light microscopes, electron microscopes provide highly magnified and detailed images of individual cells and subcellular structures, revealing features beyond the reach of the human eye. This capability is especially critical and valuable in diagnosing renal pathologies that could not be definitively differentiated with light microscopy alone. For instance, Alport Syndrome as one of the renal pathologies, relies heavily on electron microscopy to identify the ultrastructural abnormalities essential for an accurate diagnosis and effective prognosis. Alport Syndrome is classified as a hereditary renal disease caused by the abnormalities of the type IV collagen network of basement membrane in the glomerulus located within kidney cortex ( 1). Early diagnosis using TEM is advantageous, as this disease encompasses a range of renal involvement from mild to progressive nephropathy. This progression often leads to chronic kidney disease (CKD) and end-stage renal disease (ESRD) and could be associated with sensorineural hearing loss and specific ocular abnormalities ( 2). TEM enables detailed examination of the glomerular basement membrane (GBM) where Alport Syndrome presents with a characteristic pattern of irregular thinning and thickening as well as a distinctive “basket-weave” appearance resulted from multilayered and splintered of lamina densa ( 3). Thin glomerular basement membrane nephropathy (TBMN) is often compared to Alport Syndrome, as the similarities are challenging to be distinguished under light microscopy alone ( 4, 5). Through TEM, subtle ultrastructural differences in the GBM can be visualised, enabling precise differentiation.