Journal ID (nlm-ta): Nat Methods
Journal ID (iso-abbrev): Nat Methods
Title:
Nature Methods
Publisher:
Nature Publishing Group US
(New York
)
ISSN
(Print):
1548-7091
ISSN
(Electronic):
1548-7105
Publication date
(Electronic):
18
May
2023
Publication date PMC-release: 18
May
2023
Publication date
(Print):
2023
Volume: 20
Issue: 7
Pages: 1010-1020
Affiliations
[1
]GRID grid.10267.32, ISNI 0000 0001 2194 0956, Centre for Biomedical Image Analysis, Faculty of Informatics, , Masaryk University, ; Brno, Czech Republic
[2
]GRID grid.440850.d, ISNI 0000 0000 9643 2828, IT4Innovations National Supercomputing Center, , VSB – Technical University of Ostrava, ; Ostrava, Czech Republic
[3
]GRID grid.7840.b, ISNI 0000 0001 2168 9183, Bioengineering Department, , Universidad Carlos III de Madrid, ; Madrid, Spain
[4
]GRID grid.410526.4, ISNI 0000 0001 0277 7938, Instituto de Investigación Sanitaria Gregorio Marañón, ; Madrid, Spain
[5
]GRID grid.418346.c, ISNI 0000 0001 2191 3202, Optical Cell Biology, , Instituto Gulbenkian de Ciência, ; Oeiras, Portugal
[6
]GRID grid.411227.3, ISNI 0000 0001 0670 7996, Centro de Informatica, , Universidade Federal de Pernambuco, ; Recife, Brazil
[7
]GRID grid.20861.3d, ISNI 0000000107068890, Center for Advanced Methods in Biological Image Analysis, Beckman Institute, , California Institute of Technology, ; Pasadena, CA USA
[8
]GRID grid.20861.3d, ISNI 0000000107068890, Division of Biology and Biological Engineering and Howard Hughes Medical Institute,
, California Institute of Technology, ; Pasadena, CA USA
[9
]GRID grid.7892.4, ISNI 0000 0001 0075 5874, Institute for Automation and Applied Informatics, , Karlsruhe Institute of Technology, ; Eggenstein-Leopoldshafen, Germany
[10
]GRID grid.169077.e, ISNI 0000 0004 1937 2197, The Elmore Family School of Electrical and Computer Engineering, , Purdue University, ; West Lafayette, IN USA
[11
]GRID grid.38142.3c, ISNI 000000041936754X, Boston Children’s Hospital and Harvard Medical School, ; Boston, MA USA
[12
]GRID grid.134936.a, ISNI 0000 0001 2162 3504, CIVA Lab, Department of Electrical Engineering and Computer Science, , University of Missouri, ; Columbia, MO USA
[13
]GRID grid.462143.6, ISNI 0000 0004 0382 6019, Institut de Génomique Fonctionnelle de Lyon (IGFL), École Normale Supérieure de Lyon,
; Lyon, France
[14
]GRID grid.4444.0, ISNI 0000 0001 2112 9282, Centre National de la Recherche Scientifique (CNRS), ; Paris, France
[15
]GRID grid.509897.a, ISNI 0000 0004 0627 1151, Raysearch Laboratories AB, ; Stockholm, Sweden
[16
]GRID grid.166341.7, ISNI 0000 0001 2181 3113, Department of Electrical and Computer Engineering, , Drexel University, ; Philadelphia, PA USA
[17
]GRID grid.7489.2, ISNI 0000 0004 1937 0511, School of Electrical and Computer Engineering, , Ben-Gurion University of the Negev, ; Beersheba, Israel
[18
]GRID grid.7497.d, ISNI 0000 0004 0492 0584, Division of Medical Image Computing, , German Cancer Research Center (DKFZ), ; Heidelberg, Germany
[19
]GRID grid.7497.d, ISNI 0000 0004 0492 0584, Helmholtz Imaging, , German Cancer Research Center (DKFZ), ; Heidelberg, Germany
[20
]GRID grid.7497.d, ISNI 0000 0004 0492 0584, Interactive Machine Learning Group, , German Cancer Research Center (DKFZ), ; Heidelberg, Germany
[21
]GRID grid.5253.1, ISNI 0000 0001 0328 4908, Pattern Analysis and Learning Group, Department of Radiation Oncology, , Heidelberg University Hospital, ; Heidelberg, Germany
[22
]GRID grid.1005.4, ISNI 0000 0004 4902 0432, School of Computer Science and Engineering, , University of New South Wales, ; Sydney, New South Wales Australia
[23
]GRID grid.1022.1, ISNI 0000 0004 0437 5432, Griffith University, ; Nathan, Queensland Australia
[24
]GRID grid.5924.a, ISNI 0000000419370271, Biomedical Engineering Program and Ciberonc, Center for Applied Medical Research,
, Universidad de Navarra, ; Pamplona, Spain
Author information
Article
Publisher ID:
1879
DOI: 10.1038/s41592-023-01879-y
PMC ID: 10333123
PubMed ID: 37202537
SO-VID: 327197e3-b8c0-447d-a805-73e0c6d80be7
Copyright © © The Author(s) 2023
License:
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License,
which permits use, sharing, adaptation, distribution and reproduction in any medium
or format, as long as you give appropriate credit to the original author(s) and the
source, provide a link to the Creative Commons license, and indicate if changes were
made. The images or other third party material in this article are included in the
article’s Creative Commons license, unless indicated otherwise in a credit line to
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a copy of this license, visit
http://creativecommons.org/licenses/by/4.0/.
Funded by: Ministerio de Ciencia, Innovación y Universidades, Agencia Estatal de Investigación
(MCIU/AEI/10.13039/50110011033) and FEDER funds UE under Grants number RTI2018-094494-B-C22,
TED2021-131300B-I00 and PDI2021-122409OB-C22
Funded by: Czech Ministry of Education, Youth and Sports national research infrastructure Czech-BioImaging
grants number LM2018129 and CZ.02.1.01/0.0/0.0/18_046/0016045
Funded by: FundRef https://doi.org/10.13039/501100008530, EC | European Regional Development Fund (Europski Fond za Regionalni Razvoj);
Award ID: CZ.02.1.01/0.0/0.0/16_013/0001791
Award Recipient
:
Vladimír Ulman
Funded by: - Czech Ministry of Education, Youth and Sports national research infrastructure Czech-BioImaging
grants number LM2018129 and CZ.02.1.01/0.0/0.0/18_046/0016045 - Czech Ministry of
Education, Youth and Sports through the e-INFRA CZ project ID:90140
Funded by: - Ministerio de Ciencia, Innovación y Universidades, Agencia Estatal de Investigación,
MCIN / AEI / 10.13039/501100011033/, co-financed by European Regional Development
Fund (ERDF), “A way of making Europe” Grant number PID2019-109820RB-I00 - NVIDIA Corporation
for the donation of the Titan X (Pascal) GPU
Funded by: FundRef https://doi.org/10.13039/501100005635, Fundação Calouste Gulbenkian (Calouste Gulbenkian Foundation);
Funded by: FundRef https://doi.org/10.13039/100004410, European Molecular Biology Organization (EMBO);
Award ID: EMBO-2020-IG- 4734
Award ID: EMBO ALTF 174-2022
Award Recipient
:
Estibaliz Gómez-de-Mariscal
Funded by: FundRef https://doi.org/10.13039/100005471, UofI | UIUC | Beckman Institute for Advanced Science and Technology, University of
Illinois, Urbana-Champaign (Beckman Institute for Advanced Science and Technology);
Funded by: - Brazilian funding agencies FACEPE, CAPES and CNPq - Beckman Institute at Caltech
Funded by: Brazilian funding agencies FACEPE, CAPES and CNPq
Funded by: FundRef https://doi.org/10.13039/100000011, Howard Hughes Medical Institute (HHMI);
Funded by: FundRef https://doi.org/10.13039/501100009318, Helmholtz Association;
Funded by: Cognitive Information Processing and Biointerfaces International Graduate School (BIF-IGS)
Funded by: Helmholtz Information and Data Science School for Health (HIDSS4Health)
Funded by: FundRef https://doi.org/10.13039/100000065, U.S. Department of Health & Human Services | NIH | National Institute of Neurological
Disorders and Stroke (NINDS);
Award ID: R01NS110915
Award Recipient
:
Kannappan Palaniappan
Funded by: - USA ARL W911NF-18-20285
Funded by: Czech Science Foundation (GACR) grant GA21-20374S
Funded by: FundRef https://doi.org/10.13039/100010663, EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent
Science | H2020 European Research Council (H2020 Excellent Science - European Research
Council);
Award ID: ERC-2015-AdG #694918
Award Recipient
:
Ko Sugawara
Funded by: FundRef https://doi.org/10.13039/501100000854, Human Frontier Science Program (HFSP);
Award ID: RGP0043/2019
Award ID: RGP0043/2019
Award Recipient
:
Layton Aho
Andrew R. Cohen
Funded by: FundRef https://doi.org/10.13039/501100005005, Ben-Gurion University of the Negev (Ben-Gurion University);
Funded by: The Kreitman School of Advanced Graduate Studies
Funded by: - The Israel Ministry of Science, Technology and Space.- Grant numnber MOST 3-14344
- The United States - Israel Binational Science Foundation. Grant number BSF 2019135
Funded by: - Beckman Institute at Caltech
Funded by: FundRef https://doi.org/10.13039/100007406, Fundación BBVA (BBVA Foundation);
Funded by: Czech Ministry of Education, Youth and Sports national research infrastructure Czech-BioImaging
projects LM2018129 and CZ.02.1.01/0.0/0.0/18_046/0016045